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PathVisio - pathway editor, visualization and analysis software
Home Page: http://www.pathvisio.org
This project forked from pathvisio/pathvisio
PathVisio - pathway editor, visualization and analysis software
Home Page: http://www.pathvisio.org
IMPORTING SVN REPO TO GITHUB - WORK IN PROGRESS!! ********************* * PROJECT STRUCTURE * ********************* apidoc/ (autogenerated) - contains autogenerated documentation build/ (autogenerated) - contains generated class files release/ (autogenerated) - output: windows installer and zip package. lib/ - contains the external libraries that PathVisio needs. example-data/ - mapp and gpml files for quick testing modules/ - the java source code for each of the different modules pathvisio.sh - shortcut for running PathVisio from the command line (Linux/MacOSX). pathvisio.bat - shortcut for running PathVisio from the command line (Windows). readme.txt - this file build.xml - ant build file (see below) pathvisio.iss - inno-setup script, to generate installer **************************** * HOW TO IMPORT IN ECLIPSE * **************************** For up-to-date instructions, please see: http://pathvisio.org/wiki/EclipseSetup ************************* * HOW TO BUILD WITH ANT * ************************* Using the ant build file, you can build the project from the command line. You can also use ant to generate the apidocs and to create an executable jar. It is also possible to set up eclipse to build ant targets. First make sure ant is set up properly. It comes with eclipse, but you'll have to check if the path is set correctly if you want to run it from the command line. The ant build file provides the following targets, which you can invoke it from the directory which contains build.xml with ant <target> where <target> is one of: compile: just compile all classes docs: generate all apidocs exe: generate executable jar file clean: remove all generated files dist: generate zip package and windows installer. The zip package only includes files needed to *run* not compile. all: clean, then compile, jar, dist and docs. ******************************** * HOW TO RUN FROM THE TERMINAL * ******************************** If you have managed to build the classes with ant or with eclipse, you can use pathvisio.bat to start java from the command line.
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