Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.
For F1 populations, in many cases (genotype by sequencing or snp chip), we only get unphased genotypes of parents an how to phase parents' genotypes to feed SmoothDescent?
For example, how to convert lmxll nnxnp hkxhk markers to SmoothDescent format?