Comments (7)
Hi @rcasero,
Glad this all worked out. You are exactly right in your findings.
I'll try to write up some more thorough docs asap that will reference all these little things!
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@rcasero
Started throwing together a wiki. Feel free to contribute to anything you find that needs a little more explanation!
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@alanaberdeen That's a great idea, I will
from aida.
Answer to first question is that no file editing is needed.
When the server starts, it reads the image directory for new images, and automatically updates ~/Software/AIDA/dist/data/images.json
when new images are added to ~/Software/AIDA/dist/data/images/
and the page is reloaded, e.g. as
["example.jpg","foo.jpg"]
from aida.
Answer to second question is that .ndpi
files cannot be read by AIDA.
You need to install libvips
with
sudo apt install libvips
and then convert the file with e.g.
vips VipsForeignSaveDz file.ndpi ~/Software/AIDA/dist/data/images/file
This will create a '.dzi' file and the corresponding directory of image tiles
KLF14-B6NTAC-MAT-18.2b 58-16 B3 - 2016-02-03 11.01.43.dzi
KLF14-B6NTAC-MAT-18.2b 58-16 B3 - 2016-02-03 11.01.43_files
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Sorry for commenting on a closed issue, but my issue is closely related.
While I run in Development mode, no images are listed. Showing "No data available"
Please tell where I should put the images for running in development mode.
from aida.
Hey @BalachandraTejas, no problem.
The steps are essentially the same as those laid out here in the ReadMe
- Clone the repository
cd
to/dist
- Install dependencies via
npm install
- Add the images you want to annotate to the
/dist/data/images
directory. - Run the nodeJS local application via
node aidaLocal.js
Now if you want to run an additional hot-reloading development server...
cd
toAIDA
- Install dependencies via
npm install
- start a hot-reloading dev server with
npm run serve
This should leave you with a development build running at http://localhost:8080/
and referencing an expressJS backend running at http://localhost:3000/
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Related Issues (20)
- AIDA freezing browser with zoom + opacity slider HOT 1
- Crash with large annotation json files HOT 9
- Display mouse XY coordinates on Navigator HOT 1
- Measure tool shows 0um HOT 1
- Move Tool freezes interface and Delete Tool cannot delete single objects HOT 3
- Select tool delete object when selecting another object HOT 3
- File browser now shows images and annotations directories HOT 1
- Rectangles plotted without colours HOT 1
- How to implement the function of annotating images HOT 5
- Bug with `cp aidaLocal/* dist` in `package.json` HOT 2
- PayloadTooLargeError: request entity too large
- Show/hide annotations by sliding threshold HOT 1
- How do i upload an image into the editor? HOT 1
- Viewing Zeiss .czi files HOT 2
- function to convert Zeiss .czi files to DeepZoom .dzi using aicsimageio and pyvips
- Errors with "Run locally" and "Develop" HOT 2
- How do I connect a file of annotations to an image? HOT 1
- The eye icons don't seem to work HOT 5
- Data not visible when browing from another machine HOT 9
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