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How to use with SOPS?

Hi there @jessesuen ! Thanks for providing this interesting ArgoCD pattern. I'm trying to make use of it in my own CD experiment that uses SOPS for secrets encryption. I have a secret file that is encrypted with SOPS and called as a resource using Kustomize. When I follow the pattern outlined in this repo and get my "rendered YAML branches", I've found that the SOPS doesn't know what to do with it because the whole file wasn't encrypted originally with SOPS, only one YAML document in the big all.yaml file.

Do you have any workarounds for this? Is there something I'm missing about how SOPS should be used in this context?

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