Alan E. Yocca @Aeyocca (Twitter) [email protected]
All code used to create the figures shown during my presentation
- R markdown formatted file containing all code necessary to reproduce all the graphs
- Feel free to take as you like
- Accompanying files can should be located here
- If anything is missing, let me know
> sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS 10.14.3
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggrepel_0.8.0 gganimate_1.0.2 transformr_0.1.1 ggfortify_0.4.5 scales_0.5.0
[6] usethis_1.4.0 devtools_2.0.1 Sushi_1.7.1 biomaRt_2.38.0 zoo_1.8-4
[11] bindrcpp_0.2.2 forcats_0.3.0 stringr_1.3.1 dplyr_0.7.5 purrr_0.2.5
[16] readr_1.1.1 tidyr_0.8.1 tibble_1.4.2 ggplot2_3.1.0 tidyverse_1.2.1
loaded via a namespace (and not attached):
[1] nlme_3.1-137 bitops_1.0-6 fs_1.2.6 sf_0.7-2
[5] lubridate_1.7.4 bit64_0.9-7 progress_1.2.0 httr_1.3.1
[9] rprojroot_1.3-2 tools_3.5.0 backports_1.1.2 R6_2.2.2
[13] splitstackshape_1.4.6 DBI_1.0.0 lazyeval_0.2.1 BiocGenerics_0.26.0
[17] colorspace_1.3-2 withr_2.1.2 tidyselect_0.2.4 gridExtra_2.3
[21] prettyunits_1.0.2 mnormt_1.5-5 processx_3.1.0 bit_1.1-14
[25] curl_3.2 compiler_3.5.0 cli_1.0.0 rvest_0.3.2
[29] Biobase_2.40.0 xml2_1.2.0 desc_1.2.0 labeling_0.3
[33] classInt_0.3-1 psych_1.8.4 callr_2.0.4 digest_0.6.15
[37] foreign_0.8-70 pkgconfig_2.0.1 sessioninfo_1.1.1 rlang_0.2.1
[41] readxl_1.1.0 rstudioapi_0.7 RSQLite_2.1.1 farver_1.1.0
[45] bindr_0.1.1 jsonlite_1.5 RCurl_1.95-4.11 magrittr_1.5
[49] Rcpp_0.12.17 munsell_0.4.3 S4Vectors_0.18.3 stringi_1.2.2
[53] yaml_2.1.19 pkgbuild_1.0.2 plyr_1.8.4 grid_3.5.0
[57] blob_1.1.1 parallel_3.5.0 crayon_1.3.4 lattice_0.20-35
[61] haven_1.1.1 hms_0.4.2 knitr_1.20 pillar_1.2.3
[65] lpSolve_5.6.13 reshape2_1.4.3 stats4_3.5.0 pkgload_1.0.2
[69] XML_3.98-1.19 glue_1.2.0 gifski_0.8.6 data.table_1.11.8
[73] remotes_2.0.2 modelr_0.1.2 png_0.1-7 tweenr_1.0.1
[77] testthat_2.0.0 cellranger_1.1.0 gtable_0.2.0 assertthat_0.2.0
[81] broom_0.4.4 e1071_1.7-0 class_7.3-14 AnnotationDbi_1.42.1
[85] memoise_1.1.0 IRanges_2.14.10 units_0.6-2