Comments (3)
Thank you for your detailed descriptions of your concerns, this is very helpful.
Indeed, modifying the biomart host is the correct way to get older assemblies. This could be better documented.
I was not aware of the url formatting issue!
The second problem you faced is very valid and this should not happen.
I have added this issue to my todo list!
Best,
Seppe
from scenicplus.
Can we also skip this error by specifying in advance the genome_annotation
and chromsizes
file paths in the output_data section of the snakemake config.yaml
file (thereby avoiding running the download_genome_annotations
rule of the Snakefile
)?
from scenicplus.
Hi @davidhbrann
Yes, that's also a possibility!
All the best,
Seppe
from scenicplus.
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