Comments (2)
Hi @SteveTur
Are you still able to load the databases?
from ctxcore.rnkdb import FeatherRankingDatabase
db = FeatherRankingDatabase(fname, name="test")
print(db.total_genes)
Best,
Seppe
from scenicplus.
Hi Seppe,
I've managed to get everything working, but I'm encountering issues with some of the post-analysis steps. It seems that I can't figure out how to plot the old GRN style from the previous version, and I don't think the perturbation functions are working in the new alpha version. Is it possible to get an example of how to use those tools with the new version of the alpha?
Best,
Steven
from scenicplus.
Related Issues (20)
- Failing to integrate scATAC + scRNA cells (non multiome data). Error in rule prepare_GEX_ACC_non_multiome: HOT 1
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- pip installation issue HOT 3
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- TypeError: descriptor '__call__' for 'type' objects doesn't apply to a 'property' object HOT 3
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- Region set, scores.feather and NameError: name 'run_cgs_models_mallet HOT 3
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