Issue installing scenicplus about scenicplus HOT 3 CLOSED

after trying to resolve this a bit:

INFO: pip is looking at multiple versions of scenicplus to determine which version is compatible with other requirements. This could take a while.

The conflict is caused by:
    The user requested pyscenic 0.12.1+8.gd2309fe (from git+https://github.com/aertslab/pySCENIC#egg=pyscenic)
    pycistopic 2.0a0 depends on pyscenic
    scenicplus 1.0a1 depends on pyscenic 0.12.1+8.gd2309fe (from git+https://github.com/aertslab/pySCENIC@master)

from scenicplus.

Hi @jkanche

This issue arrises when MACS2 version <2.2.8 is trying to be installed. You can patch this version of MACS2, see #101. However, this version should not be installed at all. It is set to version 2.2.9.1 in the requirements.txt file.

I'm also unable to reproduce your issue:

mamba create --name issue_383 python=3.11 -y
mamba activate issue_383
git clone https://github.com/aertslab/scenicplus
cd scenicplus
pip install . --no-cache-dir

Best,

Seppe

from scenicplus.

seems like it was caused by another underlying dependency. Thank you for looking into this

from scenicplus.