Comments (3)
after trying to resolve this a bit:
INFO: pip is looking at multiple versions of scenicplus to determine which version is compatible with other requirements. This could take a while.
The conflict is caused by:
The user requested pyscenic 0.12.1+8.gd2309fe (from git+https://github.com/aertslab/pySCENIC#egg=pyscenic)
pycistopic 2.0a0 depends on pyscenic
scenicplus 1.0a1 depends on pyscenic 0.12.1+8.gd2309fe (from git+https://github.com/aertslab/pySCENIC@master)
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Hi @jkanche
This issue arrises when MACS2 version <2.2.8 is trying to be installed. You can patch this version of MACS2, see #101. However, this version should not be installed at all. It is set to version 2.2.9.1 in the requirements.txt file.
I'm also unable to reproduce your issue:
mamba create --name issue_383 python=3.11 -y
mamba activate issue_383
git clone https://github.com/aertslab/scenicplus
cd scenicplus
pip install . --no-cache-dir
Best,
Seppe
from scenicplus.
seems like it was caused by another underlying dependency. Thank you for looking into this
from scenicplus.
Related Issues (20)
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