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Compiling still requires netCDF:

make -f make_monortm linuxGNUsgl
results in error

make -f make_monortm all P_TYPE=sgl FC_TYPE=gnu PLTFRM=linux
FC=gfortran
FCFLAG="-Wall -frecord-marker=4"
make[1]: Entering directory `/run/media/ipolonsk/data/AER/temp/monoRTM/build'

monortm_v5.5_linux_gnu_sgl Makefile

This Makefile was designed for the linux platform.

It uses the gfortran compiler, with the following options:
-Wall -frecord-marker=4

The source files used are as follows:

  CntnmFactors.f90 lblparams.f90 PhysConstants.f90 struct_types.f90 PlanetEarth.f90 contnm.f90 monortm_sub.F90 modm.f90 RTMmono.f90 CloudOptProp.f90 lnfl_mod.f90 monortm.f90 tips_2003.f90 lblatm.f90 lblrtm_sub.f90  bufin_sgl.f90 netcdf_helper_mod.F90

monortm_v5.5_linux_gnu_sgl make in progress ...

test -d monortm_v5.5_linux_gnu_sgl.obj || mkdir monortm_v5.5_linux_gnu_sgl.obj
test -d monortm_v5.5_linux_gnu_sgl.mods || mkdir monortm_v5.5_linux_gnu_sgl.mods
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/CntnmFactors.f90 -o monortm_v5.5_linux_gnu_sgl.obj/CntnmFactors.o
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/lblparams.f90 -o monortm_v5.5_linux_gnu_sgl.obj/lblparams.o
../src/lblparams.f90:32.45:

  integer, parameter :: NFPTS=2001, NFMX=1.3*NFPTS
                                         1

Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1)
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/PhysConstants.f90 -o monortm_v5.5_linux_gnu_sgl.obj/PhysConstants.o
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/struct_types.f90 -o monortm_v5.5_linux_gnu_sgl.obj/struct_types.o
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/PlanetEarth.f90 -o monortm_v5.5_linux_gnu_sgl.obj/PlanetEarth.o
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/contnm.f90 -o monortm_v5.5_linux_gnu_sgl.obj/contnm.o
../src/contnm.f90:1390.10:

& ' CO2: modification from 2000-3200 cm-1 (AERI(ARM), ', &
1
Warning: Initialization string starting at (1) was truncated to fit the variable (51/52)
../src/contnm.f90:1137.3:

900 FORMAT (/,'0 *********************************************',/, &
1
Warning: Label 900 at (1) defined but not used
../src/contnm.f90:1133.3:

100 continue
1
Warning: Label 100 at (1) defined but not used
../src/contnm.f90:10418.10:

NPTC = ((V2C - V1C)/DVC) + 1
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:10442.19:

        C(j) = cloudodlayer(layer,i-1)+ (v_cntnm(j)-v_cloud_freq(i-1))*&
               1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:1450.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:1454.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:1959.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:1963.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:1156.15:

nbnd_v1c = 2 + (v1ss-v1abs)/dvabs + 1.e-5
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:1160.14:

nbnd_v2c = 1 + (v2ss-v1abs)/dvabs + 1.e-5
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:2466.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:2470.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:420.19:

        JFAC = (VJ +10.)/10. + 0.00001
               1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:430.20:

        FSCAL = 1. +                                          &
                1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:2992.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:2996.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:510.19:

        JFAC = (VJ - 1998.)/2. + 0.00001
               1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4704.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4708.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4724.15:

     C0(J)=X(I)/VJ
           1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:4725.15:

     C1(J)=Y(I)/VJ
           1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:4726.15:

     C2(J)=Z(I)/VJ
           1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:6868.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:6872.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:6882.13:

  C(J) = S(I)/VJ
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:7554.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:7558.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8198.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8202.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:580.17:

     I_FIX = (40800.-V1ABS)/DVABS+1.001
             1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8844.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8848.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8858.13:

  C(J) = S(I)/VJ
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:621.17:

     I_FIX = (40800.-V1ABS)/DVABS+1.001
             1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8978.3:

920 format (f10.2,1p,e12.2,0p,f10.2,1p2e12.2)
1
Warning: Label 920 at (1) defined but not used
../src/contnm.f90:8958.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8962.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:8974.13:

  c(j) = factor * xo2(i)* exp(xo2t(i)*xktfac) / vj
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9081.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9085.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9095.13:

  C(J) = xo2inf1(I)/vj
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9252.10:

NPTC = (v2c-v1c)/dvc + 3.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9259.15:

     DV1 = Vj - V1_osc
           1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9260.15:

     DV2 = Vj - V2_osc
           1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9273.16:

     C(J) = O2INF/VJ
            1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9311.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9315.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9325.13:

  C(J) = xo2inf3(I)/vj
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9436.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9440.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9451.13:

  C(J) = factor*S(I)/vj
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9829.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9833.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9886.27:

IF (V.LE.40000.) CORR = ((40000.-V)/4000.)*7.917E-07
1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9896.12:

YRATIO = V/48811.0
1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9847.13:

  C(J) = HERZ/VJ
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:9973.11:

  I1 = (V1C-V1S)/DVS + 1.e-5
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9977.8:

I2 = (V2C-V1S)/DVS + 1.e-5
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:9989.13:

  C(J) = S(I)/vj
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:4201.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4205.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4378.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4382.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4407.13:

  c(j) = c(j)/vj
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:4606.11:

  I1 = (V1C-V1S)/DVS + 0.01
       1

Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4610.8:

I2 = (V2C-V1S)/DVS + 0.01
1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1)
../src/contnm.f90:4625.13:

  c(j) = c(j)/vj
         1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:1115.22:

     xvrayleigh = vrayleigh/1.e4
                  1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/contnm.f90:10373.13:

logical EX
1
Warning: Unused variable 'ex' declared at (1)
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/RTMmono.f90 -o monortm_v5.5_linux_gnu_sgl.obj/RTMmono.o
../src/RTMmono.f90:319.14:

        x=radcn1*(wn(ifr)**3)/radtmr+1.
          1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/RTMmono.f90:320.23:

        tmr(ifr) = radcn2*wn(ifr) / log(x)
                   1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/RTMmono.f90:235.18:

      bb_fn = radcn1*(v**3)/(exp(v*fbeta)-1.)
              1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/RTMmono.f90:102.31:

HVRSUB = '$Revision: 19812 $'
1
Warning: CHARACTER expression will be truncated in assignment (15/18) at (1)
../src/RTMmono.f90:150.10:

    X=RADCN1*(WN(I)**3)/RAD(I)+1.
      1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
../src/RTMmono.f90:151.14:

    TB(I)=RADCN2*WN(I)/log(X)
          1

Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
gfortran -c -Wall -frecord-marker=4 -I. -Imonortm_v5.5_linux_gnu_sgl.mods ../src/netcdf_helper_mod.f90 -o monortm_v5.5_linux_gnu_sgl.obj/netcdf_helper_mod.o
Warning: ../src/netcdf_helper_mod.f90:1: Illegal preprocessor directive
Warning: ../src/netcdf_helper_mod.f90:27: Illegal preprocessor directive
../src/netcdf_helper_mod.f90:12.8:

USE netcdf
    1

Fatal Error: Can't open module file 'netcdf.mod' for reading at (1): No such file or directory
make[1]: *** [netcdf_helper_mod.o] Error 1
make[1]: Leaving directory `/run/media/ipolonsk/data/AER/temp/monoRTM/build'
make: *** [linuxGNUsgl] Error 2

to resolve two files have to be modified:
File make_monortm

1. line 40
   lnfl_mod.f90 monortm.f90 tips_2003.f90 lblatm.f90 lblrtm_sub.f90 bufin_sgl.f90 netcdf_helper_mod.F90
   replace with
   lnfl_mod.f90 monortm.f90 tips_2003.f90 lblatm.f90 lblrtm_sub.f90 bufin_sgl.f90
   ifeq ($(NETCDF),yes)
   SRCS += netcdf_helper_mod.F90
   endif
2. line 52
   monortm_sub.o : netcdf_helper_mod.o
   replace with
   lnfl_mod.f90 monortm.f90 tips_2003.f90 lblatm.f90 lblrtm_sub.f90 bufin_sgl.f90
   ifeq ($(NETCDF),yes)
   monortm_sub.o : netcdf_helper_mod.o
   endif

File monortm_sub.f90

1. line 525
   USE netcdf_helper_mod
   replace with
   #ifdef USENETCDF
   USE netcdf_helper_mod
   #endif

  **********************************
  *        M O N O R T M           *
  *        Release  5.6            *
  **********************************

NUMBER OF PROFILES: 1
INPUTS FROM MONORTM.IN

Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

Backtrace for this error:
#0 0x150383656E08
#1 0x150383655F90
#2 0x150382D874BF
#3 0x4221E9 in __lnfl_mod_MOD_prlnhd at lnfl_mod.f90:?
#4 0x42328E in __lnfl_mod_MOD_get_lnfl
#5 0x41DF9B in modmmod_MOD_modm
#6 0x427CB3 in MAIN at monortm.f90:?

I have run several versions(e.g v5.6 v5.5 v5.4) and all have produced this error,how can I solve this problem.Thank you

The file "netcdf_helper_mod.f90" is (almost) a copy of "netcdf_helper_mod.F90", but confuses the make system because it has a preprocessor directive, but the lower-case f90 file ignores it, and still tries to look for netcdf even if you're trying to make without it. Simply removing the file allowed make to find the correct upper-case F90 file, and the build completed without an issue.

I I run:
git clone --recursive [email protected]:AER-RC/monoRTM.git

I have the following messages

Cloning into 'monoRTM'...
Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

if I run:
git clone --recursive https://github.com/AER-RC/monoRTM.git
Cloning into 'monoRTM'...
remote: Enumerating objects: 1545, done.
remote: Counting objects: 100% (1545/1545), done.
remote: Compressing objects: 100% (624/624), done.
remote: Total 1545 (delta 908), reused 1494 (delta 867), pack-reused 0
Receiving objects: 100% (1545/1545), 1.63 MiB | 0 bytes/s, done.
Resolving deltas: 100% (908/908), done.
Submodule 'cross-sections' ([email protected]:AER-RC/cross-sections.git) registered for path 'cross-sections'
Cloning into 'cross-sections'...
Warning: Permanently added the RSA host key for IP address '140.82.114.3' to the list of known hosts.
Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
Clone of '[email protected]:AER-RC/cross-sections.git' into submodule path 'cross-sections' failed

Hello Rick @pernak18 and @kcadyper. We would like to track both AER-RC/monoRTM and AER-RC/LBLRTM as git submodules in the CRTM coefficient generation repository and so I wanted to ask which branch we should track for this purpose.