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rproject's Introduction

rbioc

  • Docker RStudio sever with Bioconductor

git clone

git clone https://github.com/achiral/rproject.git

change directory

cd ./rproject

edit template

edit Dockerfile

  • change Docker image (ex. rocker/tidyverse:4.1.1 => FROM docker-ID/docker-image:latest)
  • install R packages (see below exampe codes)
    RUN install2.r pkgname1 pkgname2
    RUN Rscript -e "install.packages('vector_of_package_names')"
    RUN Rscript -e 'BiocManager::install("vector_of_package_names")'

edit docker-compose.yml

  • rename Docker image (ex. image: docker-ID/docker-image:latest)

user approval

  • change password password: pw => <your_password>
  • delete environment option: - DISABLE_AUTH=false => true (without password sign in)

docker compose

docker-compose up --build -d

run RStudio from web browser

localhost:8787(rstudio/pw (default) or <your_password>)

stop docker container

docker-compose stop

restart docker container

docker-compose up --build -d

copy file from host to container

docker cp <host directory> <container name>:<container ditectory>

copy file from container to host

docker cp <container name>:<container directory> <host directory>

rproject's People

Contributors

achiral avatar

Watchers

 avatar

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