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abelcarreras avatar abelcarreras commented on June 1, 2024

That's strange. How many atoms did you use in the supercell?
Have you tried reading the XDATCAR instead? (remember to set the time step using -ts flag)
What do you obtain for the atomic displacements distribution calculation?

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wenlibin02 avatar wenlibin02 commented on June 1, 2024

@abelcarreras I used nearly the same configuration as the Si example in the doc of DynaPhoPy. I just tested using the XDATCAR, and found the velocity fitted well. Then I tried using different number of steps: -n 5000 and ``-n 2000`, giving slightly different temperatures fluctuating around 800 K. That means XDATCAR gave the correct results for Maxwell-Boltzmann distribution fitting. The same tests using OUTCAR always give 2022.4 K, no matter how many MD steps I specified.

Except the difference in Maxwell-Boltzmann distribution analysis,

  • the renormalized phonon dispersion looks the same in the two cases
  • "Peak analysis" at Gamma point using -n 8000 gives the following results,
    pipefile
  • "Atomic Displacement" analysis at direction (1,0,0) gives,
    pipefile

I used VASP 5.3.3 for the MD calculation.

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abelcarreras avatar abelcarreras commented on June 1, 2024

Ok, I see. I will check the OUTCAR parser. I use a slightly different version of VASP so maybe something changed in the OUTCAR file. The differences may also be due to the precision. The XDATCAR has more precision than the OUTCAR. I recommend to read the trajectory always from the XDATCAR file. In the future I plan to drop the OUTCAR parser support.
Thanks a lot for the feedback I will revise the OUTCAR parser and the online manual.

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wenlibin02 avatar wenlibin02 commented on June 1, 2024

Thank you for your reply. Your code is really nice.

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