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Name: Ahmed Alhendi
Type: User
Company: UCL
Bio: Research Fellow in Bioinformatics. Interested in large-scale genomic analyses.
Location: London, UK
Name: Ahmed Alhendi
Type: User
Company: UCL
Bio: Research Fellow in Bioinformatics. Interested in large-scale genomic analyses.
Location: London, UK
ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38
ASCAT copy number R package
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
DNA sequencing analysis notes from Ming Tang
:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
Dockerfile to build a container with SGE installed
Dockstore implementation of CGP core WGS analysis
Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
Sphinx documentation source for a computational genomics tutorial.
Genome-wide Association Study (GWAS) Tutorial
Web Programming with Python and JS
R script for combine HTSeq outputs into one read count matrix in R
Install GISTIC2 by one line code; GISTIC2 docker image
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
A package to detect distinct genome doubling events which have occurred in different samples from the same tumour
PhylogicNDT dockcer for clonal evolution analysis
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Molecular analysis of pre-invasive lung cancer samples
Learning to Program via Python, and Scientific Python for Programmers course material
A repository for setting up a RNAseq workflow
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.