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2pram-paper

Notebooks accompanying the 2-photon random access mesoscope (2p-RAM) paper

acsn

Automatic Correction for sCMOS-related Noise

ai-edu

AI education materials for Chinese students, teachers and IT professionals.

ao-scripts

Matlab scripts for adaptive optics (AO); most of it is related to SHWFS (Shack-Hartmann Wavefront Sensors)

aosim2

MATLAB-based Wave Propagation and Adaptive Optics Simulation

aoslo-image-processing

This repository contains matlab software pertaining to automated photoreceptor segmentation in adaptive optics scanning light ophthalmoscope (AOSLO) images. The software was developed as part of our Biomedical Optics Express submission, titled "Unsupervised Identification of Cone Photoreceptors in Non-Confocal Adaptive Optics Scanning Light Ophthalmoscope Images".

awesome-image-enhancement

awesome-low-light-image-enhancement

This is a resouce list for low light image enhancement

awesome-scholarly-productivity

blind_iqa_contrast

This repo compiles various blind image quality acessment methods focused on contrast evaluation. Only code that works in Python or Octave.

bluebrainprojectshowcase

A project to illustrate how models and data from the Blue Brain Project can be converted to NeuroML and PyNN

bsse

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

cascade

Calibrated inference of spiking from calcium ΔF/F data using deep networks

closedloop

clslm_snipped

Matlab code snippet for the generation of the figures 6 and 7 in the clipped SLM paper by M. Gay, A. Lampe, M. Breiling

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

custommatlab

hosting various usefull Matlab function

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。英文版即伯克利“深度学习导论”教材。

dalgleish-elife-2020

Dalgleish et al. 2020 (eLife): figure data and code, raw data import and processing code.

easyml

Easy Machine Learning is a general-purpose dataflow-based system for easing the process of applying machine learning algorithms to real world tasks.

entropy

code for calculating image entropy信息熵

enzpy

Extended Nijboer-Zernike (ENZ) theory toolbox for Python

export_fig

A MATLAB toolbox for exporting publication quality figures

ezcalcium

Calcium Data Extraction and Analysis

fairsim

Free Analysis and Interactive Reconstruction for Structured Illumination Microscopy

globalbioim

A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

goldendict_zh_manual

GoldenDict 中文用户手册

gradschool_matlab

Various matlab scripts for specialized image processing and data analysis.

gssip

Generate uniform illumination patterns for photostimulation of brain tissues