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archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

as_analysis

A complete Snakemake pipeline for detecting allele specific expression

bisb_bootcamp_19

Material for UCSD Bioinformatics and Systems Biology PhD program Bootcamp, 2019

crssim

Contains code and instructions for simulating CRISPR regulatory screens and assessing performance of different methods

cse250a

Code for CSE 250A - Principles of Statistical Learning

cse282

Some code for CSE 282: Bioinformatics Algorithms

cts_cnn

demux

A Snakemake pipeline for running single-cell demultiplexing simulations.

ensemble_distillation

fusion_twas

methods for functional summary-based imputation

gwas_tutorial

Introduction to GWAS and working with genotype data for UCSD BiSB Bootcamp 2018.

highlight

Syntax highlighter for R

ldsc

LD Score Regression (LDSC)

make_seurat

Run cellranger on snRNA-seq fastq files and create Seurat objecft

med277

Final project for MED 277 - Biomedical Natural Language Processing

ml_concepts

A collection of Jupyter notebooks containing tutorials for various machine learning concepts.

relics

Regulatory Element Location Identification in CRISPR screens

sc-power-analysis

Power analysis for scRNA-seq data

scatac_motif_analysis

seurat

R toolkit for single cell genomics

zrcjessica.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics