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3d-brain-segmentation

This is a repository containing code to Paper "Optimized High Resolution 3D Dense-U-Net Network for Brain and Spine Segmentation" published at MDPI Applied sciences journal - https://www.mdpi.com/2076-3417/9/3/404 .

adcmap

OsiriX plugin code (mac-only, objective C) to calculate apparent diffusion coefficient from MRI DICOM images.

admm-csnet

Matlab code for ADMM-CSNet

auto-espirit

bart

BART: Toolbox for Computational Magnetic Resonance Imaging

bet2

standalone Brain Extraction Tool (bet2), released by

blue_notes

A collection of scripts and notes on how did I set my development enviroments

bm3d-gpu

CUDA implementation of BM3D

bm3d-net

Codes for bm3d-net

bm3d_py

pure python implement of BM3D

brain-segmentation

Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net

brdnet

Image denoising using deep CNN with batch renormalization(Neural Networks,2020)

cbdnet

Code for "Toward Convolutional Blind Denoising of Real Photographs", CVPR 2019

cnn-diffusion-mribrain-segmentation

CNN based brain masking

deep-admm-net

deep-admm-net-1

deep-mri-reconstruction

Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo

deepmri

MRI reconstruction (e.g., QSM) using deep learning methods

espirit-python

Python ESPIRiT implementation

fastmri

A large-scale dataset of both raw MRI measurements and clinical MRI images

fastmri-plus

Data labels and scripts for fastMRI.org

ffdnet

FFDNet: Toward a Fast and Flexible Solution for CNN based Image Denoising (TIP, 2018)

gpunufft

gpuNUFFT - An Open-Source GPU Library for 3D Gridding with Direct Matlab and Python Interface

hosts

镜像：https://scaffrey.coding.net/p/hosts/git / https://git.qvq.network/googlehosts/hosts

kair

Image Restoration Toolbox (PyTorch). Training and testing codes for DnCNN, FFDNet, SRMD, DPSR, MSRResNet, ESRGAN, IMDN

ls-net-dynamic-mri

This the code repository for paper "Deep Low-rank plus Sparse Network for Dynamic MR Imaging".

mba

Scattered data interpolation with multilevel B-Splines

miccai2018---complementary_segmentation_network-raw-code

The following is a new architecture for robust segmentation. It may perform better than a U-Net :) for binary segmentation. I will update the code when I have some spare time within the next month. However you can simply read this one and will soon notice the pattern after a bit

midas-journal-640

N4ITK: Nick's N3 ITK Implementation For MRI Bias Field Correction

mirt

Michigan Image Reconstruction Toolbox (MIRT) - Matlab version