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2020_scworkshop

Code and data repository for the 2020 physalia course on single cell RNA sequencing.

advancedsinglecell

单细胞测序的高级教程

alphafold

Open source code for AlphaFold.

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

biocode

Bioinformatics code libraries and scripts

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bioinformatics-workbook

Bioinformatics Workbook repository

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

chandran2021

Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)

cnssinglecellr

对单细胞测序的学习，跟着流程走‘CNS图表复现’走

crane

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

crispr-human_variation_nature_medicine_manuscript

Code for Scott and Zhang, Nature Medicine manuscript on implications of human genetic variation for therapeutic genome editing

datasciencer

a curated list of R tutorials for Data Science, NLP and Machine Learning

deeplearning.ai-notes

吴恩达《深度学习》学习笔记(xmind)、代码视频讲解

forbeginners

帮助初学者快速入门生物信息学必备技能的网络资源

geartyschietinger

Scripts related to bulkRNA-seq as well as single-cell CITE-seq and VDJ-seq data of Gearty et al. (2021)

ggplot2-book

ggplot2: elegant graphics for data analysis

hawe2021_meqtl_analyses

Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

karyoploter

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

klebanoff21lt2

SIFT-seq data for patient 21LT2

live-seq

Live-seq

multiomics-network-inference

Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine

myprograms

myprograms-

ngs_learning

生物信息学交流资料

pd1_analysis_cellcnn

Code to run CellCnn analyses in collaboration paper by Krieg et al. (2018), Nature Medicine

r-bioinformatics-cookbook

R Bioinformatics Cookbook, published by Packt

r-ninja

R语言忍者秘笈