reproducing network graph about dandelion HOT 1 CLOSED

Hi @avilella, you can see from the following notebook that I create the network layout with dim = 3 (which passes to networkx's spring_layout/fruchterman_reingold associated functions).
041421_NewcastleSangerCambridge_BCR_3d_dandelion.ipynb.zip

The code to generate the graph via dandelion is the first function in https://github.com/zktuong/dandelion/blob/master/dandelion/tools/_network.py

With dandelion's function, it generates 2 graphs, one that contains singletons and one that doesn't. The one that doesn't contain singleton is the one used for making the 3d image.

You could also just generate your own graph via some other tools and convert it to networkx and then use the code.

You could also run dandelion on any dataframe as long as you have a few standard columns filled in. see this joke example:
chords.ipynb.zip

Once you have the images, it's just a matter of stitching them together (i just used ffmpeg).

Hope that helps!

Let me know if you need any more guidance.

from dandelion.