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mm36's Projects

batmeth2-dm icon batmeth2-dm

DNA methylation data analysis tool, with QC, align, calmeth, visulization

bis-tools icon bis-tools

A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )

bsvc icon bsvc

BS-Seq Variation Calling

django icon django

The Web framework for perfectionists with deadlines.

dmtools icon dmtools

BS-seq, WGBS, NOMe-Seq, RRBS data storage and analysis tool

hapcut2 icon hapcut2

software tools for haplotype assembly from sequence data

jbwa icon jbwa

Java Bindings (JNI) for bwa

methhaplo icon methhaplo

allele specific DNA methylation haplotype region

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

seqlib icon seqlib

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

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