zhijie-berkeley Goto Github PK

advanced-git

Frontend Masters Advanced Git - by Nina Zakharenko

advanced-git-exercises

Exercises for Frontend Masters Advanced Git http://git.io/advanced-git

biopython

Official git repository for Biopython (originally converted from CVS)

brightwork

This workshop was given as an introduction to using python for scientific and other data intensive purposes. The examples are related to bench top laboratory data analysis. The speaker is Shane Neeley, a bioengineering masters student at Rice University and it was hosted by Brightwork CoResearch, an independent research and entrepreneurship facility in Houston, Texas.

efficient_frontier

Markowitz portfolio optimisation (efficient frontier) in Python

evop2019

Programming for Evolutionary Biology: Python in 2 Days

fe-animation

To animation force-extension curves

git-usage

Information and command line instructions for using git/github

jupyter

Jupyter metapackage for installation, docs and chat

mass-spec-data-plotting

matplotlib

msu_ngs2015

DE analysis module for Week3

oct4sox2_nuclpos

"Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors"

ogrants

Open grants list

pandas_operation

pandas_tutorial

tutorial on how to use pandas

pfb2019

Programming for Biology 2019

phi29matlab

MATLAB files for Phi29

pkl-animation

Makes a video of traces based on raw .pkl data

pkl-plotting

pkl-to-csv

to convert pkl data to csv data

pylake

Bluelake data analysis tools

pymol

pymol python script

pymol-script-repo

Collected scripts for Pymol

python

Front End Masters Python - Course Website at https://learnpython.dev

python_tutorials

Python tutorials in both Jupyter Notebook and youtube format.

rpb1ctd_analysis

analysis of the repeating sequence within CTD of Pol II RPB1 subunit

save-rawdata

scipy-lecture-notes

Tutorial material on the scientific Python ecosystem

sojourner

Statistical analysis of single molecule trajectories. "sojourner" is an R package to address statistical and bioinformatic needs related to the analysis and comprehension of high throughput single molecule tracking data. https://sheng-liu.github.io/sojourner