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agri

The analysis of genomic regions of interest

avocado

Metadata APIs for Django

awsomics

AWSOMICS applications

awsomicsc

Custom analysis of single cell data

awsomicsmining

Implementation of methods related to data mining, machine learning, etc.

awsomicsr

The R package of awsomics

bcfanno

A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file

bioinfo_resources

bioinformatics_notes

Bioinformatics notes of various types

bioinfoutil

Bioinformatics utilities for common tasks

camda_2018

Data analysis challenges of CAMDA 2018

chopseq

ChIP-seq related functions and procedures

crux

The Crux pipeline refines and validates RNA-seq based annotation of novel transcripts and exon-exon junctions through a recursive procedure

degandmore

Analyses related to differential gene expression and functional annotation

funr

R functions for fun

gatk4-data-processing

gatk4-exome-analysis-pipeline

gatk4-germline-snps-indels

geex

Gene expression explorer

gsagenie

Gene set analysis and collections

gtutility

R utility functions that handle genotyping data

htmlwidgets

HTML Widgets for R

itr-seq2_public

itrseq-analysis-report

knitr-examples

a collection of knitr examples

marit

markdown-toc

Generate a TOC (table of contents) for markdown files, using remarkable. Used by assemble, verb, and lots of other projects.

mvgsea

Multiplevariate GSEA using logistic regression models

mymethods

Text description of bioinformatics methods

myprojects

Bioinformatics projects I have worked on