zhanglabtools Goto Github PK
Type: Organization
Bio: Dr. Shihua Zhang's laboratory
Location: Beijing, China
Type: Organization
Bio: Dr. Shihua Zhang's laboratory
Location: Beijing, China
source code for ADC
Artificial Intelligence for Operations Research course
The code file for paper BMD-MoG. main file: BMD_MoG.m
Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"
Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
Resources of our paper CASAVA
CIRCLET, a powerful tool for accurate reconstruction of circular trajectory with high resolution by considering multi-scale features of chromosomal architectures of single cells. Further division of the reconstructed trajectory helps to accurately characterize the dynamics of chromosomal structures and uncover important regulatory genes along cell-cycle progression, providing a novel framework for discovering regulatory regions even cancer markers at single-cell resolution.
Consensus TADs
The code of article "Large-scale determination and characterization of cell type-specific regulatory elements in the human genome"
Distributed Matrix Decomposition for Big Data Mining and Clustering
Deep Learning Theory course
Source code for paper 'Simple tricks of convolutional neural network architectures improve DNA–protein binding prediction'. In addition, some reusable code is also sort out for further use.
Data Science and Matrix Optimization course
R and Scala code for calculating gapper k-mer frequency vector
Source code of HiCMSD
A package used to enhance Hi-C maps with deep learning
ImputeHiFI: An Imputation Method for Multiplexed DNA FISH Data by Utilizing Single-Cell Hi-C and RNA FISH Data
deciphering chromatin domain, domain community and chromunity for 3D genome maps
Matrix normal PCA for interpretable dimension reduction and graphical noise modeling
MSTD is a generic and efficient method to identify multi-scale topological domains (MSTD) from symmetric Hi-C and other high resolution asymmetric promoter capture Hi-C datasets.
scHi-CSim, a simulator for generating single-cell Hi-C data.
Interactive analysis and visualization of spatial transcriptome GUI program
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
Constructing developmental tree from scRNA-seq data
STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.