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cellrangerrkit

Non-official Git repository for R package cellrangerRkit (currently not available elsewhere)

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

crescent

The CanceR Single Cell ExpressioN Toolkit is a scalable and standardized set of algorithmic methods, tools, and a data portal deployed on cloud computing infrastructure to support single cell genome analysis of cancer specimens. To allow comparison of cells in cancerous and healthy tissues, the system will aggregate single-cell genomic data generated by cancer researchers and connect them to international reference data generated by experts from around the world as part of the Human Cell Atlas. This data sharing and aggregation system is a key differentiating factor in CReSCENT that will increase researcher productivity by accelerating execution and comparison of computational methods, as well as providing contextual data for understanding how cells behave within tumour tissues. This platform, which will be useable by any researcher on any computing platform, will assemble a crucial data resource to navigate the upcoming wave of single cell cancer genomics research. CReSCENT will bring together researchers across a broad spectrum of scientific areas and disease types and increase the impact of data generated across research programs. In the long term, this system will pave the way for novel single cell diagnostics and discovery of new drug strategies for improved health care.

cytokit

Toolkit for analyzing single cell RNA-seq data

datasciencer

a curated list of R tutorials for Data Science, NLP and Machine Learning

dittoseq

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

droidncm

DroidNCM I'm sorry to here github fucked by [email protected]

gca

GCA: Gene Correlation Analysis for Single-cell RNA-seq data

git

A fork of Git containing Windows-specific patches.

humancellatlasdata

R/Bioconductor-based access to single-cell genomics data generated by the Human Cell Atlas Project.

nbconvertr

Vignette Engine wrapping Jupyter Notebooks

ncov2019-data-py

Scrape and manage nCov2019 related data from media using Pandas DataFrame

pb-dataset-recommender_engine

Few pieces(parts) regarding Public dataset recommender system and how to get around with comparing your own Datasets. Datasets Recommender system | Bio-NLP | WIP...

phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

r-color-palettes

Comprehensive list of color palettes available in r ❤️🧡💛💚💙💜

rnaseq_singlecellfetal

sceasy

A package to help convert different single-cell data formats to each other

scmca

Mouse cell atlas

scrna.seq.course-base

Dockerfile for the base software of scRNA.seq.course

scsva

Single-cell Scalable Visualization and Analytics

scwgcna

Weighted gene co-expression network analysis for scRNA-seq data in Seurat

seurat-to-rna-velocity

A guide to using a Seurat object in conjunction with RNA Velocity

seuratbubbleplot

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

singler

Clone of the Bioconductor repository for the SingleR package.

stromal_subclasses

code for data processing and visualisation associated with the stromal subclasses manuscript

toolsets

Toolsets for bioinformatics data analysis (R package)

whencellsbefriends

in silico identification and deconvolution of scRNA doublets