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Doraemon's Projects

beeline icon beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

cancer_network_control icon cancer_network_control

This packge is to identify the personalized driver genes by using network control principles. Applying network control methods for PDGs identification needs two key steps: one is to construct personalized state transition network which are involved in the state transition during disease development for each patient; the other is to design the optimal network control methods based on the structure of personalized state transition network. Note that each individual should have paired samples (a normal sample and a tumor sample).

dawnrank icon dawnrank

driver gene identification algorithm DawnRank 2014

elm icon elm

Python Extreme Learning Machine (ELM) is a machine learning technique used for classification/regression tasks.

emutpath icon emutpath

Identification of candidate cancer mutations based on edge perturbation.

fvs icon fvs

Minimal Feedback Vertex Set Finder

grnvbem icon grnvbem

AR1MA1 - VBEM reverse engineering GRNs method

gtrick icon gtrick

Bag of Tricks for Graph Neural Networks.

igmc icon igmc

Inductive graph-based matrix completion (IGMC) from "M. Zhang and Y. Chen, Inductive Matrix Completion Based on Graph Neural Networks, ICLR 2020 spotlight".

informer2020 icon informer2020

The GitHub repository for the paper "Informer" accepted by AAAI 2021.

leeml-notes icon leeml-notes

李宏毅《机器学习》笔记,在线阅读地址:https://datawhalechina.github.io/leeml-notes

ml icon ml

此仓库将介绍Deep Learning 所需要的基础知识以及NLP方面的模型原理到项目实操 : )

networkinference icon networkinference

Network inference performance complexity: a consequence of topological, experimental, and algorithmic determinants

plotly.py icon plotly.py

An open-source, interactive graphing library for Python (includes Plotly Express) :sparkles:

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