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auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-nlp

:book: A curated list of resources dedicated to Natural Language Processing (NLP)

awesome-selfhosted

A list of Free Software network services and web applications which can be hosted on your own servers

cacore-sdk

The caCORE Software Development Kit (SDK) generates a system built on the principles of Model Driven Architecture (MDA), n-tier architecture and a common API for data access. When the caCORE SDK-generated system is combined with controlled vocabularies and registered metadata, the resulting software system, called "caCORE-like" system, is "semantically integrated."

cagrid

*NOTE* the entire caGrid repository was migrated to capture the total release history, including all branches. Please do not checkout and use this repository, instead use the relevant cagrid-* github project.

captk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk/

cs231n.github.io

Public facing notes page

deephistology

A pan-cancer platform for mutation prediction from routine histology

ecseg

Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.

eedap

Evaluation Environment for Digital and Analog Pathology

evals

Evals is a framework for evaluating LLMs and LLM systems, and an open-source registry of benchmarks.

ex-useq

180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering, alignment/VCF QC, capture array design, IGV/ DAS2/IGB/UCSC file manipulation, etc. Both GUI and cmd line interfaces.

ex-workflows

Snakemake workflows for best practice genomic analysis

fusioncatcher

Somatic fusion genes finder for RNA-seq data

hanlp

Natural Language Processing for the next decade. Tokenization, Part-of-Speech Tagging, Named Entity Recognition, Syntactic & Semantic Dependency Parsing, Document Classification

irene

mice8992-2016

Code used in MiCE 8992 Spring 2016

microbial-bioinformatics-introductory-course-material-2018

Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL

myr

A place to update and store my R configuration

nlp_course

YSDA course in Natural Language Processing

odoo

Odoo. Open Source Apps To Grow Your Business.

opendevin

🐚 OpenDevin: Code Less, Make More

openprimer-user

Distribution of openPrimeR, openPrimeRui, and dependencies

pc-chip

Pan-Cancer Computational Histopathology

poredgeupd

Portable Edge (Chromium) Updater

proteomicsbioc2016workshop

R/Bioconductor tools for mass spectrometry-based proteomics

qupath

QuPath - Open Source Digital Pathology

re-stained_wsis_registration

Re-stained whole slide image registration

slp-3e-zh

:book: [译] 自然语言处理综论 第三版