Comments (1)
It is a pity that you blurred the name of the organism you are working with...! Without that no assistance can be provided!
So, what OrgDb
do you use?
from clusterprofiler.
Related Issues (20)
- Different behaviour of gseGO upon setting nPerm=1000 HOT 2
- Upsetplot is cropped HOT 4
- A strange non-given GO comment appears HOT 8
- Retrieve the set of genes with assigned GO HOT 1
- Error with Enricher function HOT 1
- FeatureRequest: color category and gene labels differently in `cnetplot`
- User Manual Has Minimal Discussion of Universe Choices
- gseGO Produces Results Table with Zero Rows HOT 2
- The GeneRatio denominator does not correspond to the number of input genes. HOT 1
- size = qvalue does not work with ridgeplot function() HOT 2
- compareCluster GSEA + universal annotation = does not work HOT 1
- "400 Bad Request" using enrichKEGG function from the clusterProfiler HOT 2
- "I performed the gseGO function using clusterProfiler for all ontologies together, but I wasn't able to apply the simplify function to remove redundancy. I tried various options suggested online, but none worked. As a workaround, I ran gseGO for each ontology (BP, MF, CC) separately and then removed redundancy for each ontology using GOsim. Is it correct to combine the results from all ontologies into one file and then combining it with metadata from one ontology (e.g., the output of gseGO for BP) to create enrichment plots?" or what could be the easiest way to perfrom that HOT 13
- No gene can be mapped when using enrichKEGG HOT 11
- gseKEGG function running indefinitely with a gene list of over 3000 genes HOT 1
- enrichKegg function, qvalueCutoff not working, getting as well non-significant results HOT 4
- Unable to install r package for clusterProfiler HOT 1
- KEGG analysis of metabolites
- ERROR in enrichGO,when seting ont = "ALL",Error in data.frame(..., check.names = FALSE) : 行名里有缺失值。
- dplyr and clusterprofile version 4.10.1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from clusterprofiler.