Yanpeng Chen's Projects
16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.
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Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
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a collection of scripts for organising bacterial genomes by species
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
scripts for phylogenetic analysis using barcode sequences
Supplementary files for my book, "Bioinformatics Data Skills"
non-redundant, compressed, journalled, file-based storage for biological sequences
Bioinformatics training resources
book
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Bpipe - a tool for running and managing bioinformatics pipelines
A pipeline for completing circular bacterial genomes using a sampling strategy
A tool to circularize genome assemblies
de.NBI Nanopore Training Course
Pythonic command line arguments parser, that will make you smile
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
FASTA/FASTQ pre-processing programs
To visualize Fgenesb - bacterial genome annotation pipeline results
Simple BioPython toy to filter contigs based on size. Used highly-Pythonic "generator" design - ideal for adaptation to stream processing.
quality filtering tool for long reads
A pipeline for the identification of fungi in public metagenomics datasets
initial upload
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
React
Typescript
Django
Laravel
Facebook
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Alibaba
D3
Tencent