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ad-multipheno

ad-mwas

ad-twas

ad-twas-mediation

ashr

An R package for adaptive shrinkage

bbj-fqtl

bslmm

Rcpp implementation of BSLMM

cammel-gwas

cocoa_paper

dec-keras

Keras implementation for Deep Embedding Clustering (DEC)

dtt

A C++ header-only for data transfer between linear algebra libraries (Eigen, Armadillo, OpenCV, ArrayFire, LibTorch).

ega-download-client

A basic Python-based EGA download client

eqtlbma

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

extreme-deconvolution

Density estimation using Gaussian mixtures in the presence of noisy, heterogeneous and incomplete data

fqtl

Factored QTL

gemma

Genome-wide Efficient Mixed Model Association

gtex-fqtl

gtex-v8-fqtl-pipeline

hgdp_popstruct_exercise

A classroom exercise using HGDP SNP data to introduce population structure concepts

hnswlib

Header-only C++/python library for fast approximate nearest neighbors

hsblock

interaction_twas

kqtl

liftover-plink-bed

Change reference genome for binary PLINK files.

mashr

An R package for multivariate adaptive shrinkage.

mm-vae

ms_sumida_etal_submission

oneliners

Useful bash one-liners for bioinformatics.

pancancer_pleiotropy

Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.

platyfus