pdb2reslib about olivia HOT 5 OPEN

and if I write command as
pdb2reslib -i/ PCys.pdb -o/ PCys.lib

I get the message
non-option ARGV-elements: PCys.pdb PCys.lib

so how can I make this conversion work?

from olivia.

Hi,

Thank you for your comment on pdb2reslib.
The command usage shown in the first post is correct.

pdb2reslib -i foo.pdb -o foo.lib

But, The' /11.pdb' message was strange if you specified the file in current directory.
Please try absolute path to the PDB as follows:

pdb2reslib -i /home/(path_to_current_dir)/11.pdb

It just prompts result on your terminal by omitting the '-o' argument.

Best regards,

Masashi

from olivia.

Thanks Masashi,
now I get this error:

bash-3.2$ pdb2reslib -i /Users/adaligie/Desktop/olivia_home/rsrc/cyana/PCY.pdb -o PCY.lib
Arrived 'olivia.update' from https://raw.githubusercontent.com/yokochi47/Olivia/master/legacy

Segmentation fault: 11
bash-3.2$ pdb2reslib -i/Users/adaligie/Desktop/olivia_home/rsrc/cyana/PCY.pdb -o PCY.lib
Arrived 'olivia.update' from https://raw.githubusercontent.com/yokochi47/Olivia/master/legacy

Segmentation fault: 11

from olivia.

Hi Emilyada,

Sorry for your inconvenience.
Unfortunately, the source PDB file is required to investigate the issue.
Otherwise, could you plese report core-dump analysis using GNU debugger?

Thank you,

Masashi

from olivia.

OK, I will try this, but I wonder, when I open olivia I always have the message below.

Couldn't get environment variable $NMRBIN.

do you think that it might cause problem

from olivia.