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augur

Pipeline components for real-time phylodynamic analysis

awesome-network-analysis

A curated list of awesome network analysis resources.

bamazon

Create an Amazon-like storefront with the MySQL skills.The app will take in orders from customers and deplete stock from the store's inventory.

basic-portfolio

bioconduct-for-genomic-data-science

Coursera "Bioconduct for Genomic Data Science"

booklove

TBD

bootcamp_second_class

bootstrap-portfolio

burger

This app create a burger logger with MySQL, Node, Express, Handlebars and a homemade ORM (yum!) following the MVC design pattern.

chip-seq-pipeline

ENCODE Uniform processing pipeline for ChIP-seq

covid-19

Automated Detection of COVID-19 Cases Using Deep Neural Networks with X-Ray Images

covid19

Resources for COVID-19 detection in x-rays

covid19model

Code for modelling estimated deaths and cases for COVID19.

cwlscrum_topmed

CWL workflow running in scrum for functional equivalent alignment pipeline

darknet

Convolutional Neural Networks

data-science-on-gcp

Source code accompanying book: Data Science on the Google Cloud Platform, Valliappa Lakshmanan, O'Reilly 2017

datasciencespecialization.github.io

http://DataScienceSpecialization.github.io

datasharing

The Leek group guide to data sharing

dati-umbria

some script to download geo data from Umbria Territorio

developing_data_products

Developing Data Products Course from the Johns Hopkins Data Science Lab

dotfiles

My dotfiles and personal preferences

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

fastqtl

Fork of FastQTL for SVs

flashcard-generator

This is a basic flashcard application

friendfinder

This is a compatibility-based "FriendFinder" application --basically a dating app. This full-stack site will take in results your users' surveys, then compare their answers with those from other users. The app will then display the name and picture of the user with the best overall match.

giftastic

gtex-pipeline

GTEx Consortium data production and analysis pipelines

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

heatmaply

Interactive Heat Maps for R Using plotly

inclass_heroku