yhoogstrate Goto Github PK
Name: Youri Hoogstrate
Type: User
Company: ErasmusMC
Location: The Netherlands
Youri Hoogstrate's Projects
bam-lorenz-coverage
Generate Lorenz plots and Coverage plots directly from BAM files
bio-kernel
Official landing place of the bio-kernel project
bioconda-recipes
Conda recipes for the bioconda channel.
cmatrix
Terminal based "The Matrix" like implementation
disc-art
Disc-Art - some kind of omics artifact analyser
dr-disco
:mask::loudspeaker: Dr. Disco: detecting genomic breakpoints of fusion transcripts in random hexamer RNA-seq data
ega-upload
README how to upload seq data into EGA
egfr-v3-determiner
Free open-source tool to extract counts of spliced EGFR vIII / EGFR non-vIII (wt) reads
fastafs
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
fibronectin-splice-variant-detector
fibronectin-splice-variant-detector
flaimapper
:honeybee: Fragment Location Annotation Identification Mapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data
fuma
:dash::leopard: FuMa: reporting overlap in RNA-seq detected fusion genes
galaxy
Data intensive biology for everyone.
galaxy-rna-workbench
Galaxy RNA workbench
geomnet
Examples and data for geom_net
glass-nl
GLASS-NL RNA-seq
gsam
gsam
idat-tools
Application to mix idat files (e.g. tumor with normal)
naf
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
parallel-mpileup
attempt to parallelize mplileup
pymetharray
Modified fork of "Python-based preprocessing software for Illumina methylation arrays"
pymnp
Python 3 API and batch downloader/re-runner for the MolecularNeuropathology brain classifier
recursivecorplot
Recursive correlation based natural clustering (using ggplot, labels and historgrams)
sc_seurat
Scripts for single-cell 'omics analysis
scrna-glioma-project
single-cell and single-nucleus RNA-seq analysis of public data
scrna-glioma-workflows
Workflows for the processing of public and in-house spatial and/or single cell/nucleus RNA-seq glioma datasets
segmentation-fold
:triangular_ruler: segmentation-fold: RNA folding including K-turns
seqtk
Toolkit for processing sequences in FASTA/Q formats
snoekdobber3d
3D printer modellen voor snoekdobbers
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