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1000genomes_data_indexes

The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource

aadrb

AADR Browser

adna_wdl

Ancient DNA WDL Pipeline

ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

atlas-docker

Docker image for ATLAS, the Analysis Tools for Low coverage and Ancient Samples

bioinf-3010-7150

brew

:beer: The missing package manager for OS X

cosmos-2.0

Python Workflow and Pipeline Management System

demographiccourseadelaide2018

dockerised

A collection of dockerised tools.

dockstore-tool-bamstats

A repo for the BAMStats command, used as the tutorial for Dockstore

dog_recombination

Supporting data for doi:10.1534/g3.116.034678: A Pedigree-Based Map of Recombination in the Domestic Dog Genome

eigensoft

Experimental EIGENSOFT performance improvements.

estherbot

A clone of Smooch's example bot, with a couple of little tweaks. Once you follow the README instructions all you need to do is tweak the file script.json (which is the script for your bot to follow). Those commands control your bot. Have fun! :)

fast-pipeline-for-admixture-mapping

A fast pipeline for running Tractor analysis

genozip.github.io

genozip website

giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.

gk2.0

GenomeKey for COSMOS 2.0 (deprecated)

htskey

a COSMOS 2.0 pipeline for massively parallel HTS data processing

mediator

a medium inspired jekyll theme

metaphlan2-docker

Docker image for the metaphlan2 package

mfaa_generalconf.github.io

Modern Jekyll based blog for companies

mfaa_generalconf_2016.github.io

A simple material theme for blogger

msmcandmsmc2

nf-demux

orna-docker

A docker container for ORNA

s3getlist

A simple script that allows the user to download a list of files from an AWS S3 bucket.

streamlit-example

Example Streamlit app that you can fork to test out share.streamlit.io

tiny-test-data

Super small biological datasets for unit testing

unbiaskey

Bias free variant calling pipeline for COSMOS