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awesome-multi-omics

List of software packages for multi-omics analysis

bdshack19

Coordinating the 2019 Biomedical Data Science Hackathon at UVA

bioc8145

BIOC 8145 provides the statistical and programming background as well as introduction to software tools that enable analysis of functional genomics data sets.

caveman

SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib

csbb-v1.0

CSBB-v1.0 now has been updated to version 2.1 for Linux and Mac Users

ericscript

Chimeric transcript discovery

gblab

Website for FGB lab

gblab_practice

ghpages-demo-jekyll

ghpages-tutorial-autotheme

git-intro-somrc

A brief introduction to version control via git and GitHub

go-go-ghpages

an intro workshop about github pages and jekyll

halve

Stylish Two-Column Jekyll Theme

hello-world

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

minima

Minima is a one-size-fits-all Jekyll theme for writers.

mira

R package for Methylation-based Inference of Regulatory Activity

moon

Moon is a minimal, one column jekyll theme.

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

r-color-palettes

Comprehensive list of color palettes available in r ❤️🧡💛💚💙💜

rnaseq

row-oriented-workflows

Row-oriented workflows in R with the tidyverse

rscripts

Scripts written in R to perform data analysis & visualization

rtoolbox

Toolbox with R scripts

sambamba

Tools for working with SAM/BAM/CRAM data

ssgsea2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

test1

tet2_mds

Scripts for TET2 paper

versioning_data_scripts

Filtered clone of Versioning Data & Script subdir in DataFest2017 repo

webinars

Code and slides for RStudio webinars