Comments (1)
This is a question. After generating a list of loops for a given hic matrix file, is there any way using cLoops to get the enrichment score of the same loop coordinates across another matrix file for comparison purposes? If not possible, could you suggest any tool for this? Thank you.
cLoops2 can do that in a new designed module, however it is still under developing and will be released in github soon. I do not know if other tools can do that.
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Related Issues (20)
- Input format HOT 1
- Some details about the parameter 'eps' HOT 4
- adjust parameters to increase/decrease stringency HOT 5
- calling loops on a .hic file HOT 5
- HiC input from TADbit HOT 3
- tuning parameters for stripe calls ( callStripes ) HOT 4
- Distance cut-off HOT 2
- joblib error HOT 5
- Conda env create issue HOT 8
- OpenSSL HOT 1
- cLopps hang for more than 24 hours HOT 1
- How to plot the loops in WashU HOT 1
- hicpro2bedpe bug HOT 9
- ERROR: no inter-ligation PETs detected for eps 5000 minPts 50,can't model the distance cutoff,continue anyway HOT 17
- call stripe example file has error HOT 1
- cLoops differential loop calling HOT 1
- using cloops from Juicer HOT 2
- Loops Visualization HOT 4
- Issue with file preprocessing. HOT 8
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