yaotianran Goto Github PK

afraid-to-commit

Don't be afraid to commit - a workshop/tutorial for inexperienced Python/Django developers who would like to contribute more to the projects they use.

bamstat_py

A small utility to check bam file coverage

beidou

在北斗医学检验期间的一些资料

bs-l001_8x

cleanfastq

Clean corrupted fastq files

common

A small utility containing many useful functions, needed by other projects

dataclass-

dataclass数据类型速度比较

dna-seq-pipeline

Python-implemented GATK Best Practices SNPs/Indels calling pipeline

duplex_seq_simple

This script will make an error process for your sequencing data according to the molecular tag at the ends of reads

extract_qc

广州嘉检医学 ERP 3.0系统 提取样本质控信息脚本

fastq-pair

Match up paired end fastq files quickly and efficiently.

fragdetect

A script of early-stage cancer detection by fragmentomic and chromosome aneuploidy

gatk.best.practices.workflows

A R function collection to implement GATK Best Practices Workflows

gatk4-data-processing

Snakemake implementation of data pre-processing for variant discovery from GATK Best Practices Workflows

general_feature_selection

a simple feature selection script helping you select the feature combination with the maximum AUC (Area Under Curve)

get_enriched_regions

Get the enriched regions from an arbitrary bam file according to coverage cutoff

get_tmb_length.py

Get the sequencing length above a certein coverage

jiajian

在广州嘉检时候的一些资料

pyerp

嘉检医学检验有限公司ERP 3.0系统API python封装

pyminifier

Pyminifier is a Python code minifier, obfuscator, and compressor.

seqff

Calculate fetal fraction in NIPT based on Sung K. Kim et al.

storage

For storing small files

vcf2avinput

To replace convert2annovar.pl in ANNOVAR

wgs_video_example

录制伯杰教材项目的素材

you-get

:arrow_double_down: Dumb downloader that scrapes the web