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all-modules-archive

awesome-multi-omics

List of software packages for multi-omics analysis

awesome-public-datasets

A topic-centric list of HQ open datasets.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

cheatsheets

RStudio Cheat Sheets

cs-video-courses

List of Computer Science courses with video lectures.

cytosig

data-science-cheatsheet

emt-cancer-scrnaseq

fgsea

Fast Gene Set Enrichment Analysis

friendsdontletfriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

gatk4-rnaseq-germline-snps-indels

Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

hrpi

Rmarkdown / compiled html files for human reprogramming dataset analysis

iobr

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

multi-omic-urothelial-anti-pdl1

Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

python

All Algorithms implemented in Python

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

seurat

R toolkit for single cell genomics

sigprofilerextractor

SigProfilerExtractor allows de novo extraction of mutational signatures

single-cell-papers-with-code

Papers with code for single cell related papers

the-economist

The Economist 经济学人，持续更新

the-world-of-faculty

resources for faculty

tutorial_deseq2_contrasts

twosamplemr

R package for performing 2-sample MR using MR-Base database

utils

Collection of useful scripts, largely for sequence analysis

weekly

生信爱好者周刊（每周日发布）