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Filter sequence data (FASTQ/FASTA) based on abundance. The quality scores of FASTQ data is normalized.
Add taxonomic tree information to BLAST hits. Taxonomic information is pulled from the NCBI taxon database.
A wrapper for either running local BLAST searches with the NCBI-BLAST+ tool or online BLAST searches with the Bio-Python module.
Script for filtering the cluster created by CD-HIT based on the minimum number of reads per cluster.
Pipeline for BLAST analysis of IonTorrent DNA barcoding data
454 sequence clustering and identification
Compare the results from multiple BLAST runs.
Expand the tsv output from either the BLAST_wrapper or HTS-barcode-checker pipeline with the number of reads for each cluster (based on CD-hit clustering).
Small Script to trim and filter FASTQ reads.
Compare two sets of mapping assemblies and return a list of SNPs (or InDels) that can distinguish the two sets.
Script used for the haplogroup estimation across smaller variant windows.
R script for merging and filtering metabarcode data produced by OBITools
Metabarcoding blacklists
Additional metabarcoding filters to correct for tag switching and polymerase biases
Scripts that run the OBITools pipeline and associated scripts on the cluster
Duplicate the uchime output so that the output is compatible with the cluster and BLAST script.
Split a FASTQ or FASTA file into sub files based on the primers used.
Split a sequence file into sub files based on the tags or primers used
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.