xingsiyuan Goto Github PK
Name: Siyuan Xing
Type: User
Company: WUR
Location: NED
Blog: https://www.wur.nl/en/Persons/Siyuan-S-Siyuan-Xing.htm
Name: Siyuan Xing
Type: User
Company: WUR
Location: NED
Blog: https://www.wur.nl/en/Persons/Siyuan-S-Siyuan-Xing.htm
adds sample names and read-group (RG) tags to BAM alignments
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Code
RStudio Cheat Sheets
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
Collection of modular Cytoscape tutorials for online presentation using reveal.js
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Official code repository for GATK versions 4 and up
My own Public Repository
:surfer: HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Prediction
ImpulseDE
Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
All Algorithms implemented in Python
Tools (written in C using htslib) for manipulating next-generation sequencing data
Shiny code to interrogate cuffdiff databases and make plots on the basis of gene names and XLOC numbers
RNA-seq aligner
STAR-Fusion codebase
VADT_3.0.0 New and Improved
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.