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aacr_interactome

AACR Interactome

ampad_heatmap

Shiny app for AMP-AD heatmap

ascat

ASCAT copy number R package

challengeutils

Synapse challenge utility functions

cvat

Computer Vision Annotation Tool (CVAT) is a web-based tool which helps to annotate video and images for Computer Vision algorithms

d3-hierarchy

2D layout algorithms for visualizing hierarchical data.

dermalnf

Code designed to annotate and process CTF-funded dermal NF samples. All available data and key analysis steps uploaded to http://www.synapse.org/dermalNF

docker-baseqdrops

Dockerization of baseqDrops

dockstore-workflow-mageck

garnett

Automated cell type classification

genie-bpc-quac-wrapper

Wrapper for the GENIE BPC Quality Assurance Checklist for monitoring and notifications

genie-project-requests

Stand-alone scripts for quick checks or tasks for GENIE

genie-sponsored-projects

This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files

genie_requests

Scripts for quick checks for GENIE

metanetworksynapse

nexus

Neurofibromatosis EXperiment Unification Site

ntap

This repository contains various analyses performed for the Neurofibromatosis Therapeutics Acceleration Program (NTAP).

ntap_dataexplore_shinyapp

oncotree

pcbc_dataexplorer_shinyapp

Interactive DataVis for PCBC expression data

pson

Physical Sciences Oncology Network

pythonsynapseutils

Helper Scripts to ease routine synapse python client oriented tasks

sandbox-infra

Automation for the Sage AWS org-sagebase-sandbox account

sandbox-provisioner

An service to auto provision resources on AWS scicomp

scicomp-infra

scicomp-provisioner

An service to auto provision resources

scrnaseq_benchmark

Bench-marking classification tools for scRNA-seq data

shiny-examples

single-cell-seq

For all things related to single cell sequencing

single-cell-seq-cwl

Tools and workflows for single cell RNAseq