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Xiaoli Dong's Projects

mag icon mag

Assembly and binning of metagenomes

monkeypox-nf icon monkeypox-nf

A monkeypox virus (MPXV) assembly pipeline using Nextflow for host-removal, reference-based assembly, and generation of sequence quality metrics for Illumina paired-end data using a shotgun metagenomic sequencing approach.

nf-flu icon nf-flu

Influenza genome analysis Nextflow workflow

pathogenseq icon pathogenseq

Pathogen whole genome sequence (WGS) data analysis pipeline

sequenoscope icon sequenoscope

A set of tools for working with adaptive sampling and comparison between treatment and control read sets

tbprofiler icon tbprofiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

viralrecon icon viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

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