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brainstorm3

Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology

buzsaki-lab-to-nwb

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

emacs-haskell-tutorial

Tutorial on setting up Emacs to do Haskell programming

fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

fmatoolbox

The Freely Moving Animal (FMA) Toolbox is a Matlab toolbox. Its purpose is to help analyze electrophysiological and behavioral data recorded from freely moving animals.

ggsignif

Easily add significance brackets to your ggplots

libneurosuite

Library that contains the shared components for neuroscope, klusters and ndmanager.

matnwb

A Matlab interface for reading and writing NWB files

ndmanager

NDManager (Neurophysiological Data Manager) is a simple graphical application to help neurophysiologists manage their experimental recordings.

neurochat

Analysis toolset with GUI for Neuroscience

nwb-conversion-tools

Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.

pandoc

Universal markup converter

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

probeinterface

Python package to handle probe layout, geometry and wiring to device.

quickfigures

QuickFigures is a toolset for creating scientific figures see publication for details

ray-optics

geometric ray tracing for optical systems

schreibe-dein-programm

Schreibe Dein Programm!

spikedetekt

Electrophysiological spike detection for large dense electrode arrays

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

spyking-circus

Fast and scalable spike sorting in python

thesis_pruned

webwork2

Course management front end for WeBWorK

zettelkasten

Zettelkasten-Developer-Builds

zettelkasten_rpm

SPEC file for generating RPM package of Zettelkasten

zotfile

Zotero plugin to manage your attachments: automatically rename, move, and attach PDFs (or other files) to Zotero items, sync PDFs from your Zotero library to your (mobile) PDF reader (e.g. an iPad, Android tablet, etc.), and extract PDF annotations.