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archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

archr-app

An application to run in BioDataCatalyst

archr-rstudio-server

A container with ArchR requirements and packages pre-installed

bare_bcbio

a container that runs some bcbio pipelines with no wrapper script and minimal input

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bigserviceyml

for testing Dockstore services using large files

containerdockstore

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

cwl1.2test

dcc-dockstore-tool-runner

A Dockstore tool designed to perform file downloads from Redwood, run another Dockstore tool, and then upload to Redwood.

dnanexus_symlink_internal

dockstore-tool-helloworld

dockstore-training

Working space for creating dockstore training materials

dockstore_app_test

download_performance_testing

Scripts to automate the measurement of download performance from repositories

fastqc

Files for putting fastqc in Dockstore

galaxy-test

galaxy-workflow-dockstore-example-1

galaxy-workflows

A collection of Galaxy workflows, mostly for testing

gatk

Official code repository for GATK versions 4 and up

ghapps-single-workflow

ghappstest

Test repo for Gihub apps

ghappsverifynodescriptor

goleft-wdl

Collection of miscellanous WDLized goleft functions.

hello_world

hello_world_cwl_docker_tool

A CWL Tool that uses Docker Hub

helloworldwdl

Test repo

helloworldwdl2

helloworldwdl3

test with no name

helloworldwdlstagingsmoketest