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alib

ansible-raspi-playbooks

Playbooks, templates and tasks for setup and configuration of raspberry pi projects.

biopython

My fork of the official Biopython repository, used for experimental branches etc

cloudrunner

A (failed) attempt to encapsulate AWS CloudFormation recipes as instantiated Python objects

docker-jbrowse

Docker recipe for JBrowse

dotfiles-minimal

Minimal, portable dotfiles

freeibis

freeIbis — an efficient base caller for Illumina sequencers with calibrated quality scores. This is a clone of the original repo where I intend to wrangle the “Python” code into something that actually resembles Python. This is currently a low-priority project I'll undertake in my spare time.

gitit

A wiki using HAppS, pandoc, and git

multicorn

Fork of Multicorn with filehandle cache trivially removed to avoid “too many open files” error, plus compatibility fixes for Python 3 and ldap3.

mypg

Dockerised Postgres, set up the way I like it

norvig-scrabble-binder

Peter Norvig’s “Scrabble” Jupyter Notebook, Binderised

oh-my-zsh

A community-driven framework for managing your zsh configuration. Includes 120+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, macports, etc), over 120 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

pagan

Python avatar generator for absolute nerds

pipenv

Python Development Workflow for Humans.

pyenv-installer

This tool is used to install `pyenv` and friends.

pyenv-update

update pyenv and plugins

pythonz

Python installation manager supporting CPython, Stackless, PyPy and Jython

slurm-cluster

Docker local slurm cluster

tig

Text-mode interface for git

vim-marked

Open the current Markdown buffer in Marked.app