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John B. Cole's Projects

animal-breeding-plans icon animal-breeding-plans

"Animal Breeding Plans, Third Edition, Sixth Printing" by Professor Jay L. Lush of Iowa State University.

bestpred icon bestpred

Programs for computing best prediction of lactation persistency.

gemma icon gemma

Genome-wide Efficient Mixed Model Association

gene-editing icon gene-editing

Python programs and notebooks used for simulation of gene editing in dairy cattle breeding programs.

multiple-recessives icon multiple-recessives

Programs for simulation of strategies for managing multiple recessives in a dairy cattle population.

pers-nets icon pers-nets

Find gene networks associated with lactation persistency.

pypedal3 icon pypedal3

Tools for pedigree analysis (Python 3 version)

seaborn icon seaborn

Improved matplotlib for statistical data visualization

styles icon styles

Official repository for Citation Style Language (CSL) citation styles.

visualization icon visualization

Scripts I've written to create graphics for various publications.

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