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Welcome

I studied neuroscience and behavior at Harvard Medical School with Bob Datta.

I'm interested in the intersection between machine learning and biology.

Check out my website for more info about me.

Winthrop Gillis's Projects

caiman icon caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-pipeline icon caiman-pipeline

The repository with which I place my basic caiman pipeline python code

cleanrl icon cleanrl

High-quality single file implementation of Deep Reinforcement Learning algorithms with research-friendly features (PPO, DQN, C51, DDPG, TD3, SAC, PPG)

cnmf_e icon cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

condalab icon condalab

MATLAB utility to switch between Anaconda environments

data_demon icon data_demon

A task scheduler running on python, able to watch folders and run scripts on added files, and back them up.

dynatimer icon dynatimer

The final outcome of this project is to produce an android application that will allow timers serially or in parallel

generative-inpainting-pytorch icon generative-inpainting-pytorch

A PyTorch reimplementation for paper Generative Image Inpainting with Contextual Attention (https://arxiv.org/abs/1801.07892)

geneticsounds icon geneticsounds

Genetic Sounds: The goal of this program is to evolve sounds given starter sounds, and eventual goal will be to create music based on the analysis of other music

herokuapps icon herokuapps

WebApps that I have created for fun. The plan is to use mostly python

labcode icon labcode

This is the code that I write in lab

labpython icon labpython

Basic scripts written in python to help my workflow

limbtracker icon limbtracker

Utilizing the power of the Teensy platform, this code is designed to track accelerometers positioned on each movable limb of the body. This project is only in its infancy currently.

moseq-compression icon moseq-compression

Helper functions to compress depth and infrared video acquired using the Datta Lab MoSeq platform.

nervedata icon nervedata

Repository to store all the code that I write for processing nerve data (ipython notebooks are in another directory)

neuraldata icon neuraldata

Python code for the coursera course: Exploring Neural Data

notability-uploader icon notability-uploader

Uploads newly sync'ed pdfs from Notability's backup to evernote, converts the pdf into images so that evernote can perform OCR on it

projects icon projects

Trying to complete over 100 projects in various categories in Python. Fork to learn any new language.

realtimeweb icon realtimeweb

Realtime server for transferring data to anyone who is connected

reinforcement-learning icon reinforcement-learning

Implementation of Reinforcement Learning Algorithms. Python, OpenAI Gym, Tensorflow. Exercises and Solutions to accompany Sutton's Book and David Silver's course.

sarnaandra icon sarnaandra

Data management server for organizing and processing newly formed data files

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