Comments (7)
egonw
commented on August 27, 2024
See also #45
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DeniseSl22
commented on August 27, 2024
Yes, I'll work on this when I have time.... I think I could work out the ant build myself; don't have experience with the Maven build, so perhaps we can check that later together :)
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egonw
commented on August 27, 2024
yes, that's why I assigned it to both of us... Friday?
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DeniseSl22
commented on August 27, 2024
I thought you were going through your applicants on Friday first ;) This isn't a priority for this week right? Next week is also fine I believe :)
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DeniseSl22
commented on August 27, 2024
Tina create a working ant file (commit e1b2d71).... do we still need the pom one then too? Because the MySQL database is quite large, I don't know if you want to run all this on the Jenkins server....
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DeniseSl22
commented on August 27, 2024
The converter is still not being built in jenkins automatically; even though the new build.xml file is in the workspace.... Need to dive into this in more detail later.
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egonw
commented on August 27, 2024
It is now: https://jenkins.bigcat.unimaas.nl/job/reactome2gpml-converter/
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Related Issues (20)
- WP2785, WP3334, WP3574, WP3339, WP2790, WP2766 not present in version 66 HOT 4
- Replace ':' with a space in pathway description
- Description has a stray `</div>`
- Dovitinib is not annotated with a structure identifier in GPML (but is in original) HOT 1
- Sets converted to complexes HOT 2
- Complex visible on RCbranch, not in GPML?
- Another weird visualisation
- Include not UTF-8 characters in PW title+description
- do not create empty PubMed citations
- Update BridgeDb Jars
- check if we propagate author and curator info properly
- Create name of complex (in hexagon) above full complex below PW HOT 1
- Add Luc to this repo + Run MySQL on server HOT 15
- binaries should not be in the source code repo HOT 1
- Check for special characters in description of PW HOT 3
- Buggy visualisation of complexes, including small datanodes at top left corner
- Complex visualisation bottom cut-off at certain length
- Rhea IDs iso Reactome IDs
- book references on pathway get converted to an empty reference with pmid=0
- explore Maven route
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