Comments (6)
conda can self-update, not sure how this is an issue. one can simply run
conda update conda
.
from phen2gene.
my personal feeling is, if using anaconda
, it is up to the user to keep it up-to-date. we can also attach the docker
image that @MenggeZhao created for the site to the releases (or push to hub.docker.com
) so users can use it. i guess we can't use docker
on CHOP HPC, but most users would benefit from a docker
image.
from phen2gene.
@liuqianhn my conda version is 4.8.2. I didn't know the newer packages could not be downloaded in older conda version. I will update the README.md to notice other users.
from phen2gene.
@MenggeZhao It is great to let users to know this in case they have similar issues. Updating conda can solve the issue but have a lot of conflict issues of other packages after the update.
from phen2gene.
from phen2gene.
Additionally, the README.md has a line "If you do not wish to use Anaconda, simply install the packages in the file environment.yml using pip." in the README.md. This will also work with pip. I have added a note to update to the very most recent version of conda, and am closing this issue.
from phen2gene.
Related Issues (13)
- None of the HPO terms in the example is valid? HOT 7
- Suggested improvements to environment yaml and to include absolute path of "lib" folder in the python scripts HOT 9
- Add code to filter on candidate genes HOT 1
- Updated Knowledgebase HOT 12
- webserver down HOT 2
- input file format HOT 2
- Phen2Gene package vs publication HOT 4
- problem with readlink -f on mac HOT 11
- BUG: the score is different between json and tsv when weight_model=='s' HOT 1
- Possible issue for HP:0003002 (Breast carcinoma) HOT 1
- Huge amount of files in Knowledge database HOT 5
- Update KB HOT 3
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