Comments (6)
jimhavrilla
commented on August 23, 2024
conda can self-update, not sure how this is an issue. one can simply run
conda update conda.
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jimhavrilla
commented on August 23, 2024
my personal feeling is, if using anaconda, it is up to the user to keep it up-to-date. we can also attach the docker image that @MenggeZhao created for the site to the releases (or push to hub.docker.com) so users can use it. i guess we can't use docker on CHOP HPC, but most users would benefit from a docker image.
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MenggeZhao
commented on August 23, 2024
@liuqianhn my conda version is 4.8.2. I didn't know the newer packages could not be downloaded in older conda version. I will update the README.md to notice other users.
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liuqianhn
commented on August 23, 2024
@MenggeZhao It is great to let users to know this in case they have similar issues. Updating conda can solve the issue but have a lot of conflict issues of other packages after the update.
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jimhavrilla
commented on August 23, 2024
In general, users of most software should be updating conda with very rare
exceptions. This keeps the channels up-to-date and ensures packages are
working properly.
…On Wed, Apr 29, 2020 at 5:52 PM liuqianhn ***@***.***> wrote:
@MenggeZhao <https://github.com/MenggeZhao> It is great to let users to
know this in case they have similar issues. Updating conda can solve the
issue but have a lot of conflict issues of other packages after the update.
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jimhavrilla
commented on August 23, 2024
Additionally, the README.md has a line "If you do not wish to use Anaconda, simply install the packages in the file environment.yml using pip." in the README.md. This will also work with pip. I have added a note to update to the very most recent version of conda, and am closing this issue.
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Related Issues (13)
- None of the HPO terms in the example is valid? HOT 7
- Suggested improvements to environment yaml and to include absolute path of "lib" folder in the python scripts HOT 9
- Add code to filter on candidate genes HOT 1
- Updated Knowledgebase HOT 12
- webserver down HOT 2
- input file format HOT 2
- Phen2Gene package vs publication HOT 4
- problem with readlink -f on mac HOT 11
- BUG: the score is different between json and tsv when weight_model=='s' HOT 1
- Possible issue for HP:0003002 (Breast carcinoma) HOT 1
- Huge amount of files in Knowledge database HOT 5
- Update KB HOT 3
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