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amethst_service

AMETHST, or Analysis METHod Selection Tool, is an automated pipeline that makes it possible to objectively assess the relative performance of multiple analysis methods applied to annotation abundance data. Utilizing objective, permutation-based statistics, it can determine the best performing analysis from any arbitrary collection of analyses, and can also determine the degree to which each analysis step (e.g. normalization and reprocessing of the data, selection of distance/dissimilarity metric) affects the results produced by each analysis method.

ansible

app-image-viewer

Simple example of using data and storage API to explore Sage data.

authserver

oAuth authentication server with rights management

autoskewer

Repository for wrapper scripts for adapter trimming of high throughput sequence data, mostly illumina.

awe

workflow and resource management system for bioinformatics data analysis

awe-monitor

Monitor for the AWE server

awe_develop

awe_service

The awe_service repository provides KBase release engineering tools for the deployment of the AWE client and server. The AWE repository is included as a submodule in the awe_service repository and is maintained at http://github.com/MG-RAST/AWE.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

beehive-server

Waggle cloud software for aggregation, storage and analysis of sensor data from Waggle nodes

beekeeper

carma3

Taxonomic classification of metagenomic shotgun sequences

cutadapt

cutadapt removes adapter sequences from sequencing reads

cwl-v1.1

In development version of the future CWL v1.1 specification

deploy_tools

deploy_tools

docker-nfs-server

docker-timemachine

A docker container that compiles the lastest Netatalk to run a Time Machine server.

docker_auth

Authentication server for Docker Registry 2

dynamic_dns_google_domains

dynfmi

Dynamic FM-Index for a Collection of Texts

fgs

FragGeneScan -- hidden Markov model for predicting prokaryotic coding regions

gerbera

UPnP Media Server for 2018 (Based on MediaTomb)

go-dockerclient

Go client for the Docker remote API.

go-shock-client

go client library for Shock

golib

il-dl-appointments

Illinois Secretary of State DL-ID Appointments

influxdb-testing

kubernetes-playground

latex

Dockerfile for Latex