weizhousjtu Goto Github PK

2019-humanembryo3d

The scripts of the main steps of the analysis in human embryo 3D project

3d-genome-processing-tutorial

A 3D genome data processing tutorial for ISMB/ECCB 2017

ad_px_pipe

Pipeline for performing GWAS and PrediXcan in admixed populations, finding independently associated and eQTL colocalized signals, and mapping admixture using local ancestry estimations

algorithm-pattern

算法模板，最科学的刷题方式，最快速的刷题路径，你值得拥有~

alzheimers_dnam

Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls

alzheimers_parkinsons

Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis

atac-seq

Basic workflow for ATAC-seq analysis

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

awesome-nextflow

A curated list of nextflow based pipelines

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bio_pipeline

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bioinformatics-100-days

Learn and practice the bioinformatics skills in 100 Days.

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

brain-epigenomics

brainepigenomenn

Scripts used for analysis of data in paper, 'Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric disease heritability'.

brainrnacompartments

Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation

brainseq_phase2

BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium

chendianyu.github.io

Chen Dianyu's Blog

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

cloudimg

save images

data-science-notes

数据科学的笔记以及资料搜集

devmeth450k

Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"

dg_hippo_paper

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

drug-bacteria-gene_mapping

Data analysis and visualisation pipelines for screening the capacity of common gut bacteria to metabolize oral drugs.

encode-data-usage-examples

epipsychosis_igf2

Software used to generate the results in the neuronal case/control EWAS reported in: