Comments (1)
XiaotingChen
commented on June 15, 2024
The mounting would look like something below along with 10G memory requirement. The bash works fine in windows but having problem in Macs. The actual command can be directly passed to the container (replacing bash) for the analysis.
docker run -m 10G --memory-swap 10G -it -v HOST_DATA_FOLDER:/data -v HOST_OUTPUT_FOLDER:/output weirauchlab/reli bash
/reli/RELI -snp /data/SLE_EU.snp -ld /data/SLE_EU.ld -index /data/ChIPseq.index -data /data/ChIP-seq -target hg19_0302 -build /data/GenomeBuild/hg19.txt -null /data/Null/CommonSNP_MAFmatch -dbsnp /data/SNPtable/SNPtable -out /output -match -rep 2000 -corr 1544 -phenotype Systemic_Lupus_Erythematosus -ancestry EU
from reli.
Related Issues (7)
- Paper is now out :-) HOT 1
- Makefile 'test' target fails HOT 1
- The "other platforms" instructions in README lack enough detail to be useful to non-developers HOT 1
- Segfault loading input SNP file with unexpected format HOT 11
- RELI for hg38 data HOT 2
- Some confusions about LD file and target label. HOT 1
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from reli.