waschina Goto Github PK
Name: Silvio Waschina
Type: User
Company: Kiel University
Bio: Bioinformatician/systems biologist with a focus on microbial ecology
Location: Kiel, Germany
Silvio Waschina's Projects
21_diet_microbiome
Metabolic modelling of microbial community metabolism (Diet-Microbiome-Study 2021)
agora2_auxotrophies
atlas
ATLAS - Three commands to start analyzing your metagenome data
atp8_metabopwy
chem_shift_imaging_nmr
cobrar
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
eutropia
Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space
gapseq
Informed prediction and analysis of bacteria metabolic pathways and genome-scale networks
gapseq.biochem
Exploring gapseq's biochemistry database
gapseq.tutorial.data
Files and scripts for gapseq tutorials
gapseqeval
Data and scripts for evaluations tests
gapsnake
A snakemake workflow for gapseq reconstructions
graz_cortison
hcc_microbiota2022
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
homebrew-core
🍻 Default formulae for the missing package manager for macOS (or Linux)
libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
microbiomegs2
mxe
MXE (M cross environment)
particles
A particle simulation engine based on a port of d3-force
recipes
System for building static dependent libraries for CRAN packages
sybil
Efficient Constrained Based Modelling in R
sybil.diagnostics
A set of simple diagnostics tests for sybil metabolic models.
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